Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994820.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| CAI7994822.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| CAI7994824.1 | |
| CAI7994826.1 | |
| CAI7994834.1 | BICAUDAL D FAMILY MEMBER |
| CAI7994830.1 | BICAUDAL D FAMILY MEMBER |
| CAI7994836.1 | BICAUDAL D FAMILY MEMBER |
| CAI7994838.1 | BICAUDAL D FAMILY MEMBER |
| CAI7994832.1 | BICAUDAL D FAMILY MEMBER |
| CAI7994828.1 | |
| CAI7994840.1 | ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN |
| CAI7994842.1 | FIBROUS SHEATH INTERACTING PROTEIN 1 |
| CAI7994852.1 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
| CAI7994850.1 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
| CAI7994848.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI7994846.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI7994844.1 | |
| CAI7994856.1 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
| CAI7994854.1 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
| CAI7994858.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| CAI7994862.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| CAI7994860.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| CAI7994864.1 | |
| CAI7994866.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| CAI7994868.1 | |
| CAI7994882.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994880.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994884.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994878.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994876.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994874.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994870.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994872.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994886.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994888.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994890.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI7994895.1 | |
| CAI7994897.1 | UBIQUITIN |
| CAI7994899.1 | UBIQUITIN |
| CAI7994901.1 | |
| CAI7994903.1 | |
| CAI7994907.1 | PORCUPINE |
| CAI7994905.1 | PORCUPINE |
| CAI7994915.1 | RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT |
| CAI7994921.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7994919.1 | ZINC FINGER-CONTAINING PROTEIN P48ZNF |
| CAI7994917.1 | ZINC FINGER-CONTAINING PROTEIN P48ZNF |
| CAI7994923.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7994925.1 | |
| CAI7994927.1 | ALPHA-MANNOSIDASE 2C1 |
