Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7995282.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7995280.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7995286.1 | |
| CAI7995288.1 | |
| CAI7995290.1 | |
| CAI7995294.1 | FORMATE DEHYDROGENASE |
| CAI7995292.1 | FORMATE DEHYDROGENASE |
| CAI7995298.1 | FORMATE DEHYDROGENASE |
| CAI7995296.1 | FORMATE DEHYDROGENASE |
| CAI7995300.1 | FORMATE DEHYDROGENASE |
| CAI7995302.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI7995304.1 | BCDNA.GH03377 |
| CAI7995306.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI7995308.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI7995310.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI7995312.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI7995329.1 | |
| CAI7995331.1 | |
| CAI7995333.1 | |
| CAI7995335.1 | |
| CAI7995339.1 | |
| CAI7995341.1 | DNA-DIRECTED RNA POLYMERASE III |
| CAI7995337.1 | DNA-DIRECTED RNA POLYMERASE III |
| CAI7995343.1 | GLYCERATE KINASE |
| CAI7995347.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI7995345.1 | GLYCERATE KINASE |
| CAI7995349.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 73 |
| CAI7995351.1 | C2H2 ZINC FINGER CGI-62-RELATED |
| CAI7995353.1 | ARMADILLO-TYPE FOLD |
| CAI7995355.1 | |
| CAI7995367.1 | VACUOLAR PROTEIN 8 |
| CAI7995365.1 | VACUOLAR PROTEIN 8 |
| CAI7995363.1 | VACUOLAR PROTEIN 8 |
| CAI7995361.1 | VACUOLAR PROTEIN 8 |
| CAI7995359.1 | VACUOLAR PROTEIN 8 |
| CAI7995357.1 | |
| CAI7995369.1 | VACUOLAR PROTEIN 8 |
| CAI7995371.1 | VACUOLAR PROTEIN 8 |
| CAI7995375.1 | VACUOLAR PROTEIN 8 |
| CAI7995373.1 | VACUOLAR PROTEIN 8 |
| CAI7995377.1 | |
| CAI7995379.1 | |
| CAI7995381.1 | CYCLINS |
| CAI7995390.1 | UNCHARACTERIZED |
| CAI7995388.1 | UNCHARACTERIZED |
| CAI7995386.1 | UNCHARACTERIZED |
| CAI7995392.1 | UNCHARACTERIZED |
| CAI7995416.1 | |
| CAI7995418.1 | |
| CAI7995420.1 |
