Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7996502.1 | SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE / DNAA INITIATOR-ASSOCIATING FACTOR FOR REPLICATION INITIATION |
| CAI7996506.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI7996508.1 | HEME-DEPENDENT PEROXIDASE YWFI-RELATED |
| CAI7996510.1 | XAA-PRO AMINOPEPTIDASE 1 |
| CAI7996512.1 | XAA-PRO AMINOPEPTIDASE 1 |
| CAI7996514.1 | |
| CAI7996518.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI7996516.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI7996520.1 | TRYPTOPHAN SYNTHASE-RELATED |
| CAI7996522.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7996524.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7996526.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7996528.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7996530.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7996532.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7996534.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI7996536.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI7996540.1 | FRUCTOSE-BISPHOSPHATE ALDOLASE |
| CAI7996538.1 | FRUCTOSE-BISPHOSPHATE ALDOLASE |
| CAI7996542.1 | FRUCTOSE-1,6-BISPHOSPHATASE-RELATED |
| CAI7996546.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI7996544.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI7996552.1 | |
| CAI7996550.1 | |
| CAI7996554.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI7996556.1 | |
| CAI7996566.1 | |
| CAI7996568.1 | TRANSMEMBRANE CHANNEL-RELATED |
| CAI7996574.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI7996572.1 | UNCHARACTERIZED |
| CAI7996570.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI7996578.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI7996576.1 | UNCHARACTERIZED |
| CAI7996580.1 | UNCHARACTERIZED |
| CAI7996582.1 | UNCHARACTERIZED |
| CAI7996584.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 11 |
| CAI7996588.1 | UNCHARACTERIZED |
| CAI7996586.1 | UNCHARACTERIZED |
| CAI7996594.1 | IMPORTIN ALPHA |
| CAI7996592.1 | IMPORTIN ALPHA |
| CAI7996596.1 | IMPORTIN ALPHA |
| CAI7996598.1 | |
| CAI7996600.1 | |
| CAI7996616.1 | |
| CAI7996618.1 | |
| CAI7996621.1 | |
| CAI7996620.1 | |
| CAI7996622.1 | |
| CAI7996623.1 | |
| CAI7996629.1 | ATP7, ISOFORM B |
