Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7996392.1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| CAI7996390.1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| CAI7996400.1 | RABCONNECTIN-RELATED |
| CAI7996402.1 | RABCONNECTIN-RELATED |
| CAI7996398.1 | RABCONNECTIN-RELATED |
| CAI7996396.1 | RABCONNECTIN-RELATED |
| CAI7996394.1 | RABCONNECTIN-RELATED |
| CAI7996404.1 | RABCONNECTIN-RELATED |
| CAI7996406.1 | RABCONNECTIN-RELATED |
| CAI7996408.1 | RABCONNECTIN-RELATED |
| CAI7996410.1 | RABCONNECTIN-RELATED |
| CAI7996420.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996418.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996422.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996416.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996414.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996412.1 | DNA POLYMERASE SUBUNIT GAMMA-1 |
| CAI7996424.1 | NADH-UBIQUINONE OXIDOREDUCTASE |
| CAI7996426.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI7996428.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI7996432.1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
| CAI7996434.1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
| CAI7996436.1 | SER/THR-PROTEIN KINASE RIO2 |
| CAI7996430.1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
| CAI7996438.1 | SER/THR-PROTEIN KINASE RIO2 |
| CAI7996440.1 | - |
| CAI7996442.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI7996444.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996452.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996454.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996450.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996448.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996446.1 | |
| CAI7996456.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7996460.1 | BRCA1-ASSOCIATED PROTEIN |
| CAI7996458.1 | |
| CAI7996462.1 | |
| CAI7996464.1 | |
| CAI7996471.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI7996469.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI7996473.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI7996475.1 | RIBOSOMAL PROTEIN L13 |
| CAI7996477.1 | |
| CAI7996492.1 | AMINO ACID AMINOTRANSFERASE |
| CAI7996490.1 | AMINO ACID AMINOTRANSFERASE |
| CAI7996494.1 | - |
| CAI7996498.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE |
| CAI7996496.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE |
| CAI7996500.1 | BIFUNCTIONAL PROTEIN HLDE |
| CAI7996504.1 | SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE / DNAA INITIATOR-ASSOCIATING FACTOR FOR REPLICATION INITIATION |
