Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7996926.1 | |
| CAI7996928.1 | - |
| CAI7996931.1 | |
| CAI7996933.1 | |
| CAI7996936.1 | |
| CAI7996939.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7996942.1 | |
| CAI7996944.1 | HISTONE ACETYLTRANSFERASE COMPLEX |
| CAI7996946.1 | |
| CAI7996953.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI7996954.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7996955.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7996956.1 | THYMOCYTE NUCLEAR PROTEIN 1 |
| CAI7996957.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI7996958.1 | ACYL-COA SYNTHETASE |
| CAI7996959.1 | NUDIX HYDROLASE 23 |
| CAI7996960.1 | SUGAR KINASE |
| CAI7996961.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7996962.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7996963.1 | COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE |
| CAI7996964.1 | FORMAMIDASE C869.04-RELATED |
| CAI7996966.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7996965.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7996967.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI7996968.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI7996970.1 | TRANSAMIDASE |
| CAI7996969.1 | TRANSAMIDASE |
| CAI7996972.1 | |
| CAI7996974.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI7996976.1 | CHORISMATE MUTASE |
| CAI7996978.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE |
| CAI7996991.1 | TRANSPOSON |
| CAI7997003.1 | TRANSPOSON |
| CAI7996987.1 | TRANSPOSON |
| CAI7996993.1 | TRANSPOSON |
| CAI7996995.1 | TRANSPOSON |
| CAI7997001.1 | TRANSPOSON |
| CAI7996997.1 | TRANSPOSON |
| CAI7996999.1 | TRANSPOSON |
| CAI7996989.1 | TRANSPOSON |
| CAI7996985.1 | TRANSPOSON |
| CAI7997005.1 | TRANSPOSON |
| CAI7997009.1 | TRANSPOSON |
| CAI7997007.1 | TRANSPOSON |
| CAI7997011.1 | TRANSPOSON |
| CAI7997013.1 | TRANSPOSON |
| CAI7997015.1 | |
| CAI7997018.1 | |
| CAI7997020.1 | EXSB FAMILY PROTEIN |
| CAI7997022.1 | NICKEL INSERTION PROTEIN-RELATED |
