Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998682.1 | |
| CAI7998684.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| CAI7998690.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI7998688.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI7998686.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI7998692.1 | HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA |
| CAI7998696.1 | RIBOSOMAL PROTEIN S9 |
| CAI7998694.1 | RIBOSOMAL PROTEIN S9 |
| CAI7998700.1 | RIBOSOMAL PROTEIN L13 |
| CAI7998698.1 | RIBOSOMAL PROTEIN L13 |
| CAI7998702.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI7998704.1 | |
| CAI7998710.1 | RIBOSOMAL PROTEIN L17 |
| CAI7998708.1 | RIBOSOMAL PROTEIN L17 |
| CAI7998706.1 | RIBOSOMAL PROTEIN L17 |
| CAI7998712.1 | |
| CAI7998714.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI7998716.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI7998718.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
| CAI7998720.1 | METHIONINE AMINOPEPTIDASE |
| CAI7998722.1 | NUCLEOTIDE KINASE |
| CAI7998726.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7998724.1 | |
| CAI7998730.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7998728.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7998732.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI7998736.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI7998734.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI7998738.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI7998740.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI7998746.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI7998744.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI7998742.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI7998748.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI7998752.1 | 60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29 |
| CAI7998750.1 | |
| CAI7998756.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI7998754.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI7998758.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI7998764.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI7998762.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI7998760.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI7998776.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998774.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998772.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998770.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998768.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998766.1 | RIBOSOMAL PROTEIN L2 |
| CAI7998778.1 | 60S RIBOSOMAL PROTEIN L23A |
| CAI7998780.1 | 50S RIBOSOMAL PROTEIN L4 |
