Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999230.1 | |
| CAI7999228.1 | |
| CAI7999227.1 | |
| CAI7999233.1 | |
| CAI7999234.1 | |
| CAI7999235.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI7999236.1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
| CAI7999237.1 | AMINOMETHYLTRANSFERASE |
| CAI7999238.1 | |
| CAI7999239.1 | |
| CAI7999240.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7999241.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI7999242.1 | |
| CAI7999243.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7999244.1 | THIOL PEROXIDASE |
| CAI7999245.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI7999251.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999253.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999255.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999249.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999247.1 | |
| CAI7999259.1 | |
| CAI7999257.1 | |
| CAI7999261.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999263.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999265.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999267.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI7999275.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7999271.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7999273.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7999277.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7999279.1 | |
| CAI7999285.1 | |
| CAI7999283.1 | |
| CAI7999281.1 | |
| CAI7999287.1 | |
| CAI7999293.1 | |
| CAI7999295.1 | |
| CAI7999297.1 | |
| CAI7999299.1 | |
| CAI7999301.1 | |
| CAI7999303.1 | |
| CAI7999305.1 | ASTEROID PROTEIN |
| CAI7999317.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI7999319.1 | |
| CAI7999321.1 | - |
| CAI7999323.1 | |
| CAI7999327.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI7999325.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI7999329.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
