Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999559.1 | LD22376P |
| CAI7999557.1 | |
| CAI7999569.1 | LD22376P |
| CAI7999571.1 | LD22376P |
| CAI7999573.1 | LD22376P |
| CAI7999577.1 | LD22376P |
| CAI7999575.1 | LD22376P |
| CAI7999579.1 | LD22376P |
| CAI7999581.1 | LD22376P |
| CAI7999583.1 | LD22376P |
| CAI7999585.1 | |
| CAI7999587.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI7999589.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999591.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999593.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999595.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2 |
| CAI7999597.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2 |
| CAI7999599.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2 |
| CAI7999603.1 | HISTONE H2A |
| CAI7999601.1 | HISTONE H2A |
| CAI7999607.1 | |
| CAI7999605.1 | |
| CAI7999611.1 | |
| CAI7999619.1 | IFT140/172-RELATED |
| CAI7999617.1 | IFT140/172-RELATED |
| CAI7999613.1 | |
| CAI7999615.1 | |
| CAI7999634.1 | PROMININ PROM PROTEIN |
| CAI7999632.1 | PROMININ PROM PROTEIN |
| CAI7999630.1 | PROMININ PROM PROTEIN |
| CAI7999636.1 | PROMININ PROM PROTEIN |
| CAI7999638.1 | |
| CAI7999640.1 | |
| CAI7999642.1 | |
| CAI7999644.1 | |
| CAI7999646.1 | |
| CAI7999652.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7999650.1 | |
| CAI7999648.1 | |
| CAI7999654.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7999656.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI7999658.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI7999660.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI7999662.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI7999664.1 | L-FUCOSE KINASE |
| CAI7999672.1 | L-FUCOSE KINASE |
| CAI7999670.1 | L-FUCOSE KINASE |
| CAI7999668.1 | L-FUCOSE KINASE |
| CAI7999666.1 | L-FUCOSE KINASE |
| CAI7999674.1 | L-FUCOSE KINASE |
