Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999818.1 | ANDROGLOBIN |
| CAI7999816.1 | ANDROGLOBIN |
| CAI7999814.1 | ANDROGLOBIN |
| CAI7999820.1 | ANDROGLOBIN |
| CAI7999822.1 | GUANYLATE BINDING PROTEIN |
| CAI7999824.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 |
| CAI7999836.1 | OXIDASE/PEROXIDASE |
| CAI7999830.1 | NADPH OXIDASE |
| CAI7999834.1 | NADPH OXIDASE |
| CAI7999828.1 | NADPH OXIDASE |
| CAI7999826.1 | OXIDASE/PEROXIDASE |
| CAI7999840.1 | NADPH OXIDASE |
| CAI7999838.1 | NADPH OXIDASE |
| CAI7999832.1 | NADPH OXIDASE |
| CAI7999842.1 | DUAL OXIDASE 2 |
| CAI7999844.1 | CHAPERONIN |
| CAI7999846.1 | CHAPERONIN |
| CAI7999848.1 | CHAPERONIN |
| CAI7999850.1 | CHAPERONIN |
| CAI7999852.1 | HEADCASE PROTEIN |
| CAI7999858.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999856.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999854.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999860.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999862.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999864.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999866.1 | CLATHRIN ASSEMBLY PROTEIN |
| CAI7999868.1 | PEPTIDYLPROLYL ISOMERASE |
| CAI7999870.1 | |
| CAI7999878.1 | CULLIN |
| CAI7999876.1 | CULLIN |
| CAI7999874.1 | CULLIN |
| CAI7999872.1 | CULLIN |
| CAI7999880.1 | CULLIN |
| CAI7999882.1 | CULLIN |
| CAI7999884.1 | CULLIN |
| CAI7999886.1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
| CAI7999888.1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
| CAI7999890.1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
| CAI7999892.1 | QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1 |
| CAI7999894.1 | QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1 |
| CAI7999900.1 | WD40 REPEAT FAMILY |
| CAI7999898.1 | WD40 REPEAT FAMILY |
| CAI7999896.1 | WD40 REPEAT FAMILY |
| CAI7999902.1 | WD40 REPEAT FAMILY |
| CAI7999904.1 | |
| CAI7999906.1 | |
| CAI7999910.1 | |
| CAI7999918.1 | |
| CAI7999916.1 |
