Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999920.1 | |
| CAI7999912.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI7999914.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI7999922.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI7999924.1 | |
| CAI7999936.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999938.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999934.1 | MYOSIN LIGHT CHAIN 1, 3 |
| CAI7999932.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999930.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999940.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999942.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7999947.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI7999957.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7999955.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7999953.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7999951.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7999949.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7999959.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI7999961.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI7999963.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI7999965.1 | |
| CAI7999967.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI7999973.1 | |
| CAI7999971.1 | |
| CAI7999975.1 | |
| CAI7999977.1 | |
| CAI7999997.1 | |
| CAI7999993.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999991.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999995.1 | |
| CAI7999989.1 | |
| CAI8000001.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7999999.1 | |
| CAI8000005.1 | PROTEIN LKAAEAR1 |
| CAI8000003.1 | PROTEIN LKAAEAR1 |
| CAI8000007.1 | PROTEIN LKAAEAR1 |
| CAI8000013.1 | GLUTAMATE CYSTEINE LIGASE |
| CAI8000011.1 | GLUTAMATE CYSTEINE LIGASE |
| CAI8000009.1 | GLUTAMATE CYSTEINE LIGASE |
| CAI8000015.1 | GLUTAMATE CYSTEINE LIGASE |
| CAI8000023.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8000019.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8000017.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8000021.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8000025.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8000027.1 | PEPTIDASE S8 |
| CAI8000029.1 | U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A |
| CAI8000031.1 | PEPTIDASE S8 |
| CAI8000037.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
