Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000145.1 | TUBBY-RELATED |
| CAI8000171.1 | - |
| CAI8000169.1 | - |
| CAI8000175.1 | - |
| CAI8000173.1 | |
| CAI8000177.1 | - |
| CAI8000178.1 | - |
| CAI8000179.1 | - |
| CAI8000183.1 | ELONGATOR COMPLEX PROTEIN 1 |
| CAI8000184.1 | ELONGATOR COMPLEX PROTEIN 1 |
| CAI8000180.1 | ELONGATOR COMPLEX PROTEIN 1 |
| CAI8000182.1 | ELONGATOR COMPLEX PROTEIN 1 |
| CAI8000181.1 | ELONGATOR COMPLEX PROTEIN 1 |
| CAI8000186.1 | - |
| CAI8000188.1 | |
| CAI8000192.1 | HCLS1-ASSOCIATED PROTEIN X-1 |
| CAI8000194.1 | HCLS1-ASSOCIATED PROTEIN X-1 |
| CAI8000190.1 | |
| CAI8000196.1 | HISTONE H4 |
| CAI8000198.1 | AAA-FAMILY ATPASE |
| CAI8000202.1 | TYROSINE-PROTEIN KINASE |
| CAI8000200.1 | TYROSINE-PROTEIN KINASE |
| CAI8000204.1 | METHYL-CPG BINDING PROTEIN, MBD |
| CAI8000206.1 | |
| CAI8000208.1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 |
| CAI8000210.1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 |
| CAI8000212.1 | FRUCTOSE-1,6-BISPHOSPHATASE-RELATED |
| CAI8000214.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000216.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000224.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000222.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000220.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000218.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000226.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000228.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000230.1 | |
| CAI8000232.1 | |
| CAI8000234.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000236.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000238.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000240.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8000244.1 | RHO FAMILY GTPASE |
| CAI8000242.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7 |
| CAI8000246.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8000249.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8000251.1 | |
| CAI8000253.1 | |
| CAI8000258.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| CAI8000260.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| CAI8000256.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
