Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000035.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8000033.1 | |
| CAI8000039.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8000043.1 | |
| CAI8000041.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8000053.1 | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) |
| CAI8000055.1 | MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC |
| CAI8000057.1 | |
| CAI8000059.1 | |
| CAI8000061.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8000065.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8000063.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8000067.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8000069.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8000071.1 | BIOTIN PROTEIN LIGASE |
| CAI8000073.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8000075.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8000077.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8000079.1 | ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE |
| CAI8000081.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000087.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000083.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000085.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000089.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000091.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8000093.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8000095.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8000097.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8000099.1 | ENOYL-COA HYDRATASE |
| CAI8000101.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8000103.1 | |
| CAI8000105.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8000107.1 | RHAMNOSYLTRANSFERASE WBBL |
| CAI8000109.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8000111.1 | TRANSCRIPTIONAL REGULATOR, GNTR FAMILY |
| CAI8000119.1 | THIOPURINE S-METHYLTRANSFERASE |
| CAI8000121.1 | |
| CAI8000127.1 | THROMBOSPONDIN |
| CAI8000125.1 | PROPERDIN |
| CAI8000123.1 | SPONDIN |
| CAI8000131.1 | PROPERDIN |
| CAI8000129.1 | PROPERDIN |
| CAI8000133.1 | SPONDIN |
| CAI8000135.1 | SPONDIN |
| CAI8000139.1 | PROPERDIN |
| CAI8000141.1 | PROPERDIN |
| CAI8000143.1 | PROPERDIN |
| CAI8000137.1 | THROMBOSPONDIN |
| CAI8000147.1 | TUBBY-RELATED |
| CAI8000149.1 | TUBBY-RELATED |
