Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000386.1 | |
| CAI8000384.1 | |
| CAI8000396.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8000397.1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| CAI8000398.1 | SOLUTE CARRIER FAMILY 35 |
| CAI8000399.1 | UNCHARACTERIZED |
| CAI8000401.1 | PROTEIN SIDEKICK |
| CAI8000400.1 | PROTEIN SIDEKICK |
| CAI8000402.1 | PROTEIN SIDEKICK |
| CAI8000403.1 | |
| CAI8000404.1 | TITIN |
| CAI8000405.1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
| CAI8000406.1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
| CAI8000407.1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
| CAI8000408.1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
| CAI8000409.1 | NEFA-INTERACTING NUCLEAR PROTEIN NIP30 |
| CAI8000410.1 | SPERMATOGENESIS ASSOCIATED 11-RELATED |
| CAI8000411.1 | SPERMATOGENESIS ASSOCIATED 11-RELATED |
| CAI8000412.1 | SPERMATOGENESIS ASSOCIATED 11-RELATED |
| CAI8000416.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000415.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000413.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000414.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000417.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000418.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| CAI8000419.1 | RIBOSOMAL PROTEIN L19 |
| CAI8000420.1 | HOMEOBOX PROTEIN NKX |
| CAI8000421.1 | VACUOLAR PROTEIN SORTING VPS41 |
| CAI8000423.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8000422.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8000424.1 | |
| CAI8000425.1 | |
| CAI8000428.1 | |
| CAI8000427.1 | |
| CAI8000426.1 | |
| CAI8000429.1 | |
| CAI8000432.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8000430.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8000431.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8000433.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8000435.1 | |
| CAI8000434.1 | |
| CAI8000436.1 | |
| CAI8000437.1 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE |
| CAI8000438.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8000439.1 | |
| CAI8000441.1 | NUCLEOLAR GTP-BINDING PROTEIN 1 |
| CAI8000440.1 | |
| CAI8000442.1 | |
| CAI8000443.1 |
