Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000589.1 | UNCHARACTERIZED |
| CAI8000585.1 | UNCHARACTERIZED |
| CAI8000587.1 | UNCHARACTERIZED |
| CAI8000583.1 | UNCHARACTERIZED |
| CAI8000581.1 | UNCHARACTERIZED |
| CAI8000601.1 | |
| CAI8000603.1 | UNCHARACTERIZED |
| CAI8000605.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI8000609.1 | |
| CAI8000607.1 | SURFEIT LOCUS PROTEIN |
| CAI8000611.1 | - |
| CAI8000613.1 | |
| CAI8000615.1 | |
| CAI8000617.1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| CAI8000619.1 | - |
| CAI8000621.1 | REGULATOR OF RPOS |
| CAI8000623.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8000625.1 | |
| CAI8000627.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8000635.1 | ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE |
| CAI8000637.1 | ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE |
| CAI8000629.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8000631.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8000633.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8000639.1 | ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE |
| CAI8000641.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8000648.1 | |
| CAI8000654.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8000650.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8000652.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8000656.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8000658.1 | E3 UBIQUITIN PROTEIN LIGASE SIAH |
| CAI8000660.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8000664.1 | |
| CAI8000662.1 | |
| CAI8000666.1 | |
| CAI8000668.1 | ERGOTHIONEINE BIOSYNTHESIS PROTEIN 1 |
| CAI8000670.1 | ERGOTHIONEINE BIOSYNTHESIS PROTEIN 1 |
| CAI8000672.1 | |
| CAI8000677.1 | |
| CAI8000685.1 | |
| CAI8000681.1 | |
| CAI8000683.1 | |
| CAI8000679.1 | |
| CAI8000687.1 | |
| CAI8000691.1 | |
| CAI8000693.1 | |
| CAI8000695.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8000697.1 | |
| CAI8000699.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
