Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000951.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8000953.1 | |
| CAI8000955.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8000957.1 | ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE |
| CAI8000959.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000961.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8000963.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8000965.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8000967.1 | |
| CAI8000969.1 | L-ASPARAGINASE |
| CAI8000971.1 | METALLOPROTEASE M41 FTSH |
| CAI8000973.1 | |
| CAI8000975.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8000977.1 | METALLOPROTEASE |
| CAI8000979.1 | OXIDOREDUCTASE-RELATED |
| CAI8000981.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8000983.1 | AMINOTRANSFERASE |
| CAI8000987.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8000985.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8000989.1 | PROTEIN ABHD11 |
| CAI8000991.1 | |
| CAI8000993.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8000995.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8000997.1 | |
| CAI8000999.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8001006.1 | |
| CAI8001004.1 | |
| CAI8001008.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8001010.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8001012.1 | |
| CAI8001016.1 | |
| CAI8001020.1 | |
| CAI8001018.1 | |
| CAI8001022.1 | |
| CAI8001024.1 | |
| CAI8001026.1 | |
| CAI8001028.1 | |
| CAI8001030.1 | |
| CAI8001033.1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| CAI8001035.1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| CAI8001037.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8001039.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8001041.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8001045.1 | |
| CAI8001047.1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| CAI8001049.1 | PREFOLDIN SUBUNIT 5 |
| CAI8001051.1 | PREFOLDIN SUBUNIT 5 |
| CAI8001053.1 | PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2 |
| CAI8001055.1 | AMPHIPHYSIN |
| CAI8001067.1 | SOLEUCYL-TRNA SYNTHETASE |
