Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000705.1 | |
| CAI8000707.1 | |
| CAI8000713.1 | |
| CAI8000711.1 | |
| CAI8000715.1 | |
| CAI8000709.1 | |
| CAI8000717.1 | |
| CAI8000721.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8000719.1 | |
| CAI8000723.1 | |
| CAI8000737.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000731.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000735.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000729.1 | OS01G0948300 PROTEIN |
| CAI8000739.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000741.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000743.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000733.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8000745.1 | RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN |
| CAI8000747.1 | |
| CAI8000754.1 | UNCHARACTERIZED |
| CAI8000756.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 |
| CAI8000758.1 | |
| CAI8000760.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 |
| CAI8000766.1 | ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 |
| CAI8000764.1 | ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10 |
| CAI8000762.1 | MITOCHONDRIAL CARRIER HOMOLOG |
| CAI8000768.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8000770.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8000772.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8000782.1 | CCR4 NOT-RELATED |
| CAI8000784.1 | CCR4 NOT-RELATED |
| CAI8000778.1 | CCR4 NOT-RELATED |
| CAI8000780.1 | CCR4 NOT-RELATED |
| CAI8000776.1 | CCR4 NOT-RELATED |
| CAI8000774.1 | CCR4 NOT-RELATED |
| CAI8000786.1 | CCR4 NOT-RELATED |
| CAI8000788.1 | |
| CAI8000791.1 | SULFATASE |
| CAI8000793.1 | CARRIER DOMAIN-CONTAINING PROTEIN |
| CAI8000798.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8000796.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8000800.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8000802.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8000821.1 | LIPOYL SYNTHASE |
| CAI8000823.1 | LIPOYL SYNTHASE |
| CAI8000825.1 | |
| CAI8000827.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8000829.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8000831.1 | DETHIOBIOTIN SYNTHETASE |
