Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000492.1 | MYOTUBULARIN-RELATED |
| CAI8000495.1 | MYOTUBULARIN-RELATED |
| CAI8000496.1 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| CAI8000497.1 | LUD_DOM DOMAIN-CONTAINING PROTEIN |
| CAI8000499.1 | POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030) |
| CAI8000498.1 | POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030) |
| CAI8000500.1 | PHP DOMAIN PROTEIN |
| CAI8000501.1 | HEDGEHOG-INTERACTING PROTEIN |
| CAI8000502.1 | |
| CAI8000503.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8000504.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8000505.1 | |
| CAI8000515.1 | |
| CAI8000517.1 | |
| CAI8000519.1 | |
| CAI8000523.1 | UPF0428 PROTEIN CXORF56 |
| CAI8000521.1 | UPF0428 PROTEIN CXORF56 |
| CAI8000525.1 | UPF0428 PROTEIN CXORF56 |
| CAI8000529.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI8000527.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI8000531.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI8000533.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI8000535.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI8000537.1 | SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 |
| CAI8000539.1 | |
| CAI8000541.1 | |
| CAI8000543.1 | PRE-MRNA SPLICING FACTOR |
| CAI8000545.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8000547.1 | |
| CAI8000549.1 | ANHYDRO-N-ACETYLMURAMIC ACID KINASE |
| CAI8000555.1 | 3-KETO-STEROID REDUCTASE |
| CAI8000553.1 | 3-KETO-STEROID REDUCTASE |
| CAI8000551.1 | 3-KETO-STEROID REDUCTASE |
| CAI8000557.1 | 3-KETO-STEROID REDUCTASE |
| CAI8000559.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8000561.1 | |
| CAI8000563.1 | ISLET CELL AUTOANTIGEN 1 |
| CAI8000565.1 | LD33804P |
| CAI8000567.1 | SELENOPROTEIN F |
| CAI8000569.1 | 60S RIBOSOMAL PROTEIN L35 |
| CAI8000571.1 | 60S RIBOSOMAL PROTEIN L35 |
| CAI8000575.1 | UNCHARACTERIZED |
| CAI8000573.1 | UNCHARACTERIZED |
| CAI8000579.1 | TRANSCRIPTIONAL ADAPTER 1 |
| CAI8000577.1 | TRANSCRIPTIONAL ADAPTER 1 |
| CAI8000597.1 | UNCHARACTERIZED |
| CAI8000599.1 | UNCHARACTERIZED |
| CAI8000595.1 | UNCHARACTERIZED |
| CAI8000593.1 | UNCHARACTERIZED |
| CAI8000591.1 | UNCHARACTERIZED |
