Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8000833.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8000835.1 | ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE |
| CAI8000845.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000843.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000841.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000839.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000837.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8000847.1 | SSL7038 PROTEIN |
| CAI8000849.1 | SSL7039 PROTEIN |
| CAI8000851.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8000853.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8000855.1 | |
| CAI8000857.1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| CAI8000859.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8000861.1 | |
| CAI8000863.1 | |
| CAI8000867.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000865.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000875.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000873.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000871.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000869.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8000879.1 | BOLA TRANSCRIPTION REGULATOR |
| CAI8000877.1 | |
| CAI8000881.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8000883.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8000885.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8000887.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI8000889.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8000891.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8000893.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8000895.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8000897.1 | AMINOMETHYLTRANSFERASE |
| CAI8000899.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8000901.1 | ALANINE DEHYDROGENASE |
| CAI8000903.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8000923.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8000925.1 | FAD-DEPENDENT OXIDOREDUCTASE |
| CAI8000927.1 | |
| CAI8000929.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8000931.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8000933.1 | ALCOHOL DEHYDROGENASE |
| CAI8000935.1 | YNAI-RELATED MECHANOSENSITIVE ION CHANNEL |
| CAI8000937.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8000939.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8000941.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8000943.1 | |
| CAI8000945.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8000947.1 | RIBD C-TERMINAL DOMAIN CONTAINING PROTEIN |
| CAI8000949.1 | LIPOPROTEIN-RELATED |
