Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001069.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8001071.1 | |
| CAI8001075.1 | LIN37 HOMOLOG |
| CAI8001077.1 | LIN37 HOMOLOG |
| CAI8001073.1 | LIN37 HOMOLOG |
| CAI8001079.1 | |
| CAI8001081.1 | DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59 |
| CAI8001083.1 | ZINC FINGER PROTEIN |
| CAI8001085.1 | |
| CAI8001087.1 | WD40 REPEAT PROTEIN SWD2 |
| CAI8001091.1 | |
| CAI8001089.1 | |
| CAI8001093.1 | |
| CAI8001095.1 | |
| CAI8001097.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8001103.1 | DYNEIN HEAVY CHAIN |
| CAI8001101.1 | DYNEIN HEAVY CHAIN |
| CAI8001099.1 | DYNEIN HEAVY CHAIN |
| CAI8001105.1 | DYNEIN HEAVY CHAIN |
| CAI8001107.1 | DYNEIN HEAVY CHAIN |
| CAI8001109.1 | |
| CAI8001111.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8001114.1 | |
| CAI8001116.1 | |
| CAI8001118.1 | |
| CAI8001122.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001120.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001124.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001126.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001128.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001130.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8001150.1 | |
| CAI8001152.1 | |
| CAI8001156.1 | CYTOKINE RECEPTOR |
| CAI8001154.1 | |
| CAI8001158.1 | CYTOKINE RECEPTOR |
| CAI8001160.1 | PROTEIN SIDEKICK |
| CAI8001162.1 | |
| CAI8001164.1 | |
| CAI8001166.1 | |
| CAI8001168.1 | |
| CAI8001170.1 | |
| CAI8001172.1 | |
| CAI8001174.1 | |
| CAI8001176.1 | |
| CAI8001178.1 | |
| CAI8001186.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8001184.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8001182.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8001180.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
