Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001293.1 | ACTIN |
| CAI8001295.1 | NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED |
| CAI8001300.1 | 2-PHOSPHOSULFOLACTATE PHOSPHATASE-RELATED |
| CAI8001302.1 | HEME-DEPENDENT PEROXIDASE YWFI-RELATED |
| CAI8001308.1 | QUINOLINATE SYNTHETASE A |
| CAI8001306.1 | QUINOLINATE SYNTHETASE A |
| CAI8001304.1 | QUINOLINATE SYNTHETASE A |
| CAI8001310.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8001312.1 | PAREP8-RELATED |
| CAI8001314.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8001318.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8001316.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8001326.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8001328.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8001332.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8001330.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8001334.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI8001336.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8001338.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8001340.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8001342.1 | |
| CAI8001344.1 | PROTEIN TOLQ |
| CAI8001346.1 | |
| CAI8001348.1 | |
| CAI8001350.1 | |
| CAI8001352.1 | |
| CAI8001356.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8001354.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8001360.1 | |
| CAI8001362.1 | |
| CAI8001364.1 | |
| CAI8001366.1 | |
| CAI8001368.1 | |
| CAI8001377.1 | FERREDOXIN-RELATED |
| CAI8001375.1 | FERREDOXIN-RELATED |
| CAI8001379.1 | |
| CAI8001381.1 | RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR |
| CAI8001383.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001385.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001387.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001389.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001393.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001391.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001395.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8001397.1 | |
| CAI8001399.1 | ZGC:162297 |
| CAI8001403.1 | 5'-NUCLEOTIDASE SURE |
| CAI8001401.1 | 5'-NUCLEOTIDASE SURE |
| CAI8001405.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8001407.1 | DIAMINOPIMELATE DECARBOXYLASE |
