Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001409.1 | |
| CAI8001413.1 | |
| CAI8001417.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8001419.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8001415.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8001421.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8001423.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8001429.1 | |
| CAI8001431.1 | |
| CAI8001433.1 | MULTI-COPPER OXIDASE |
| CAI8001435.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8001441.1 | |
| CAI8001439.1 | |
| CAI8001437.1 | |
| CAI8001444.1 | |
| CAI8001446.1 | RHO FAMILY GTPASE |
| CAI8001448.1 | RHO FAMILY GTPASE |
| CAI8001450.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8001452.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8001468.1 | |
| CAI8001470.1 | |
| CAI8001466.1 | |
| CAI8001476.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| CAI8001480.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| CAI8001474.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| CAI8001472.1 | |
| CAI8001478.1 | |
| CAI8001482.1 | |
| CAI8001484.1 | |
| CAI8001488.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8001486.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8001490.1 | CADHERIN-23 |
| CAI8001492.1 | DESMOGLEIN FAMILY MEMBER |
| CAI8001498.1 | CALRETICULIN AND CALNEXIN |
| CAI8001494.1 | CALRETICULIN AND CALNEXIN |
| CAI8001496.1 | CALRETICULIN AND CALNEXIN |
| CAI8001500.1 | CALRETICULIN AND CALNEXIN |
| CAI8001502.1 | |
| CAI8001504.1 | |
| CAI8001510.1 | RAD25/XP-B DNA REPAIR HELICASE |
| CAI8001512.1 | RAD25/XP-B DNA REPAIR HELICASE |
| CAI8001508.1 | RAD25/XP-B DNA REPAIR HELICASE |
| CAI8001506.1 | RAD25/XP-B DNA REPAIR HELICASE |
| CAI8001514.1 | RAD25/XP-B DNA REPAIR HELICASE |
| CAI8001516.1 | |
| CAI8001518.1 | |
| CAI8001520.1 | |
| CAI8001522.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8001524.1 | ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2 |
| CAI8001528.1 |
