Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8001672.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8001671.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8001670.1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| CAI8001674.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8001675.1 | GAMMA-SECRETASE SUBUNIT PEN-2 |
| CAI8001676.1 | |
| CAI8001677.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8001679.1 | |
| CAI8001678.1 | |
| CAI8001680.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| CAI8001690.1 | SYMPLEKIN-RELATED |
| CAI8001686.1 | SYMPLEKIN-RELATED |
| CAI8001688.1 | SYMPLEKIN-RELATED |
| CAI8001685.1 | SYMPLEKIN-RELATED |
| CAI8001684.1 | SYMPLEKIN-RELATED |
| CAI8001683.1 | SYMPLEKIN-RELATED |
| CAI8001682.1 | SYMPLEKIN-RELATED |
| CAI8001681.1 | |
| CAI8001692.1 | SYMPLEKIN-RELATED |
| CAI8001694.1 | SYMPLEKIN-RELATED |
| CAI8001699.1 | JITTERBUG, ISOFORM N |
| CAI8001707.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8001703.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8001705.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8001701.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8001709.1 | OS02G0152300 PROTEIN |
| CAI8001711.1 | JITTERBUG, ISOFORM N |
| CAI8001725.1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
| CAI8001723.1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
| CAI8001721.1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
| CAI8001719.1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
| CAI8001727.1 | C2 DOMAIN-CONTAINING PROTEIN 5 |
| CAI8001733.1 | |
| CAI8001731.1 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
| CAI8001729.1 | |
| CAI8001737.1 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
| CAI8001735.1 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
| CAI8001739.1 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
| CAI8001741.1 | |
| CAI8001743.1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| CAI8001749.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
| CAI8001747.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
| CAI8001745.1 | |
| CAI8001756.1 | PLAKOPHILLIN-RELATED |
| CAI8001754.1 | PLAKOPHILLIN-RELATED |
| CAI8001758.1 | |
| CAI8001760.1 | FARNESYL-PYROPHOSPHATE SYNTHETASE |
| CAI8001763.1 | |
| CAI8001765.1 | |
| CAI8001769.1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
