Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002009.1 | |
| CAI8002011.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8002017.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8002013.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8002015.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8002019.1 | |
| CAI8002022.1 | |
| CAI8002024.1 | |
| CAI8002026.1 | |
| CAI8002028.1 | |
| CAI8002039.1 | |
| CAI8002041.1 | |
| CAI8002043.1 | |
| CAI8002045.1 | ALPHA-MANNOSIDASE |
| CAI8002051.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002049.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002053.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002055.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002057.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002061.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002059.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8002047.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
| CAI8002063.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8002069.1 | SOWAH (DROSOPHILA) HOMOLOG |
| CAI8002067.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8002071.1 | SOWAH (DROSOPHILA) HOMOLOG |
| CAI8002065.1 | |
| CAI8002075.1 | |
| CAI8002073.1 | |
| CAI8002077.1 | |
| CAI8002081.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI8002079.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI8002083.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI8002090.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8002092.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8002094.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8002096.1 | |
| CAI8002100.1 | 7-CARBOXY-7-DEAZAGUANINE SYNTHASE |
| CAI8002098.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8002102.1 | DIHYDROOROTASE-RELATED |
| CAI8002104.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8002106.1 | ELONGATION FACTOR TS |
| CAI8002108.1 | RIBOSOME RECYCLING FACTOR |
| CAI8002114.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8002110.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8002112.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8002116.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8002118.1 | REGULATOR OF SIGMA-E PROTEASE RSEP |
| CAI8002120.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8002122.1 | PRIMOSOMAL PROTEIN N |
