Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002255.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002257.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002249.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002247.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8002245.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8002263.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002251.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002261.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002265.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002267.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002269.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002271.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8002274.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8002276.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8002279.1 | PROLINE AND SERINE-RICH PROTEIN 3 |
| CAI8002281.1 | HOMEO BOX HB9 LIKE A-RELATED |
| CAI8002285.1 | |
| CAI8002287.1 | EXPRESSED PROTEIN |
| CAI8002289.1 | EXPRESSED PROTEIN |
| CAI8002291.1 | |
| CAI8002297.1 | SHIPPO-1-RELATED |
| CAI8002295.1 | SHIPPO-1-RELATED |
| CAI8002301.1 | SHIPPO-1-RELATED |
| CAI8002299.1 | SHIPPO-1-RELATED |
| CAI8002303.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8002315.1 | NIPSNAP-RELATED |
| CAI8002317.1 | |
| CAI8002321.1 | ATP7, ISOFORM B |
| CAI8002319.1 | ATP7, ISOFORM B |
| CAI8002323.1 | ATP7, ISOFORM B |
| CAI8002329.1 | ATP7, ISOFORM B |
| CAI8002325.1 | ATP7, ISOFORM B |
| CAI8002327.1 | ATP7, ISOFORM B |
| CAI8002345.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002337.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002343.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002341.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002331.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002335.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002339.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002333.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8002347.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8002355.1 | OCTANOYLTRANSFERASE |
| CAI8002353.1 | OCTANOYLTRANSFERASE |
| CAI8002351.1 | OCTANOYLTRANSFERASE |
| CAI8002349.1 | OCTANOYLTRANSFERASE |
| CAI8002357.1 | |
| CAI8002359.1 | |
| CAI8002361.1 | |
| CAI8002363.1 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED |
