Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002365.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8002367.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8002373.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8002371.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8002369.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8002375.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8002378.1 | |
| CAI8002380.1 | |
| CAI8002382.1 | |
| CAI8002384.1 | |
| CAI8002386.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8002395.1 | UNCHARACTERIZED |
| CAI8002393.1 | UNCHARACTERIZED |
| CAI8002391.1 | |
| CAI8002397.1 | UNCHARACTERIZED |
| CAI8002399.1 | UNCHARACTERIZED |
| CAI8002406.1 | |
| CAI8002404.1 | |
| CAI8002402.1 | |
| CAI8002413.1 | INTELECTIN |
| CAI8002421.1 | G PATCH AND KOW-CONTAINING |
| CAI8002417.1 | SOLUTE CARRIER FAMILY 35 |
| CAI8002423.1 | G PATCH AND KOW-CONTAINING |
| CAI8002425.1 | G PATCH AND KOW-CONTAINING |
| CAI8002419.1 | SOLUTE CARRIER FAMILY 35 |
| CAI8002415.1 | |
| CAI8002427.1 | |
| CAI8002429.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI8002433.1 | WASH COMPLEX SUBUNIT 4 |
| CAI8002431.1 | WASH COMPLEX SUBUNIT 4 |
| CAI8002435.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002443.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8002441.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8002445.1 | |
| CAI8002447.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8002449.1 | |
| CAI8002451.1 | |
| CAI8002453.1 | |
| CAI8002455.1 | |
| CAI8002457.1 | |
| CAI8002459.1 | |
| CAI8002461.1 | |
| CAI8002463.1 | |
| CAI8002465.1 | |
| CAI8002478.1 | |
| CAI8002480.1 | PEPTIDYLPROLYL ISOMERASE |
| CAI8002482.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8002484.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8002486.1 | |
| CAI8002488.1 | UNCHARACTERIZED |
