Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002668.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002667.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8002670.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8002671.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI8002672.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8002673.1 | |
| CAI8002674.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8002675.1 | |
| CAI8002676.1 | |
| CAI8002677.1 | FUMARATE REDUCTASE |
| CAI8002678.1 | PEPTIDASE S12 |
| CAI8002679.1 | PEPTIDASE S12 |
| CAI8002680.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI8002681.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8002682.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8002683.1 | VITAMIN B12-BINDING PROTEIN |
| CAI8002684.1 | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEIN |
| CAI8002685.1 | |
| CAI8002686.1 | TRANSPOSASE RV3428C-RELATED |
| CAI8002687.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8002688.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8002689.1 | |
| CAI8002690.1 | LUPUS LA PROTEIN-RELATED |
| CAI8002692.1 | |
| CAI8002693.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 |
| CAI8002691.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG |
| CAI8002695.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002694.1 | |
| CAI8002702.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002701.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002700.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002699.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002698.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002697.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002696.1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
| CAI8002703.1 | |
| CAI8002704.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8002705.1 | |
| CAI8002706.1 | |
| CAI8002707.1 | |
| CAI8002708.1 | |
| CAI8002712.1 | POLYCOMB GROUP PROTEIN |
| CAI8002711.1 | POLYCOMB GROUP PROTEIN |
| CAI8002710.1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8002709.1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8002713.1 | POLYCOMB GROUP PROTEIN |
| CAI8002715.1 | POLYCOMB GROUP PROTEIN |
| CAI8002714.1 | |
| CAI8002716.1 | POLYCOMB GROUP PROTEIN |
| CAI8002717.1 | POLYCOMB GROUP PROTEIN |
