Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002957.1 | |
| CAI8002959.1 | |
| CAI8002961.1 | |
| CAI8002963.1 | |
| CAI8002965.1 | |
| CAI8002967.1 | |
| CAI8002969.1 | |
| CAI8002971.1 | |
| CAI8002974.1 | |
| CAI8002989.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8002987.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8002991.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8002997.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8002995.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8002993.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8002999.1 | EXSB FAMILY PROTEIN |
| CAI8003003.1 | PEPTIDE DEFORMYLASE |
| CAI8003001.1 | PEPTIDE DEFORMYLASE |
| CAI8003005.1 | |
| CAI8003007.1 | PEPTIDE DEFORMYLASE |
| CAI8003009.1 | |
| CAI8003011.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8003019.1 | SPORULATION PROTEIN RELATED |
| CAI8003013.1 | SPORULATION PROTEIN RELATED |
| CAI8003015.1 | SPORULATION PROTEIN RELATED |
| CAI8003017.1 | SPORULATION PROTEIN RELATED |
| CAI8003021.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8003023.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8003025.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8003027.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8003029.1 | LYSYL-TRNA SYNTHETASE |
| CAI8003031.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8003033.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8003035.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8003037.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8003039.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8003041.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8003043.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8003045.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8003047.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8003049.1 | SLR6095 PROTEIN |
| CAI8003051.1 | SLR6095 PROTEIN |
| CAI8003053.1 | HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED |
| CAI8003057.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8003055.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8003059.1 | ABC TRANSPORTER I FAMILY MEMBER 10 |
| CAI8003061.1 | GLYCERATE KINASE |
| CAI8003063.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8003073.1 | LIPASE MATURATION FACTOR |
| CAI8003071.1 | LIPASE MATURATION FACTOR |
