Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003309.1 | CYTOKINE RECEPTOR |
| CAI8003307.1 | CYTOKINE RECEPTOR |
| CAI8003311.1 | CYTOKINE RECEPTOR |
| CAI8003313.1 | |
| CAI8003315.1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| CAI8003317.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI8003319.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI8003321.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI8003325.1 | SLL1037 PROTEIN |
| CAI8003327.1 | AMINOPEPTIDASE |
| CAI8003329.1 | AMINOPEPTIDASE |
| CAI8003331.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8003333.1 | |
| CAI8003335.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8003337.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8003346.1 | SIN3B-RELATED |
| CAI8003348.1 | |
| CAI8003352.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8003350.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8003356.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003354.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003358.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003360.1 | WD40 REPEAT PROTEIN |
| CAI8003362.1 | WD40 REPEAT PROTEIN |
| CAI8003364.1 | |
| CAI8003368.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003366.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003370.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8003372.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8003379.1 | |
| CAI8003381.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8003383.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8003385.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8003387.1 | METHIONINE--TRNA LIGASE |
| CAI8003389.1 | METHIONINE--TRNA LIGASE |
| CAI8003391.1 | ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH] |
| CAI8003393.1 | ADP-RIBOSYLGLYCOHYDROLASE |
| CAI8003395.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003397.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003399.1 | |
| CAI8003401.1 | AMINOMETHYLTRANSFERASE |
| CAI8003403.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8003405.1 | FATTY-ACID AMIDE HYDROLASE |
| CAI8003407.1 | |
| CAI8003409.1 | |
| CAI8003411.1 | LIPOYL SYNTHASE |
| CAI8003415.1 | GUANYLATE KINASE-RELATED |
| CAI8003413.1 | GUANYLATE KINASE-RELATED |
| CAI8003417.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8003419.1 | AROM/DEHYDROQUINATE SYNTHASE |
