Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003614.1 | |
| CAI8003619.1 | |
| CAI8003618.1 | |
| CAI8003617.1 | |
| CAI8003616.1 | |
| CAI8003615.1 | |
| CAI8003620.1 | |
| CAI8003623.1 | MOLTING PROTEIN MLT-4 |
| CAI8003622.1 | MOLTING PROTEIN MLT-4 |
| CAI8003621.1 | MOLTING PROTEIN MLT-4 |
| CAI8003625.1 | |
| CAI8003624.1 | |
| CAI8003626.1 | |
| CAI8003627.1 | |
| CAI8003630.1 | SELENOPROTEIN O |
| CAI8003629.1 | SELENOPROTEIN O |
| CAI8003631.1 | SELENOPROTEIN O |
| CAI8003628.1 | SELENOPROTEIN O |
| CAI8003632.1 | SELENOPROTEIN O |
| CAI8003633.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8003634.1 | TRANSAMIDASE |
| CAI8003635.1 | TRANSAMIDASE |
| CAI8003636.1 | VACUOLAR SORTING PROTEIN VPS29 |
| CAI8003637.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8003638.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8003639.1 | GTP-BINDING PROTEIN HFLX |
| CAI8003640.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8003641.1 | |
| CAI8003642.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8003643.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI8003644.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8003645.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI8003646.1 | PHOSPHOGLYCERATE KINASE |
| CAI8003647.1 | |
| CAI8003648.1 | CST COMPLEX SUBUNIT CTC1 |
| CAI8003649.1 | CST COMPLEX SUBUNIT CTC1 |
| CAI8003650.1 | THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED |
| CAI8003654.1 | CULLIN |
| CAI8003653.1 | CULLIN |
| CAI8003652.1 | CULLIN |
| CAI8003651.1 | CULLIN |
| CAI8003655.1 | CULLIN |
| CAI8003656.1 | |
| CAI8003657.1 | |
| CAI8003658.1 | BLL5662 PROTEIN-RELATED |
| CAI8003659.1 | LEUCINE DEHYDROGENASE |
| CAI8003660.1 | |
| CAI8003661.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8003662.1 | |
| CAI8003663.1 |
