Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003422.1 | |
| CAI8003424.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8003426.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8003431.1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
| CAI8003433.1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
| CAI8003437.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003439.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003435.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003441.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003443.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003445.1 | PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED |
| CAI8003449.1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED |
| CAI8003447.1 | |
| CAI8003451.1 | |
| CAI8003453.1 | HISTONE H2B |
| CAI8003455.1 | HISTONE H2A |
| CAI8003460.1 | |
| CAI8003470.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003468.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003466.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003464.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003462.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8003476.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8003478.1 | ALLANTOINASE |
| CAI8003480.1 | |
| CAI8003482.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8003484.1 | |
| CAI8003486.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8003490.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8003488.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8003492.1 | RIBOSOME MATURATION FACTOR RIMP |
| CAI8003494.1 | |
| CAI8003496.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8003498.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8003500.1 | FAMILY N-ACETYLTRANSFERASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G01380)-RELATED |
| CAI8003510.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8003514.1 | |
| CAI8003512.1 | |
| CAI8003516.1 | |
| CAI8003518.1 | LIM DOMAIN-CONTAINING PROTEIN |
| CAI8003520.1 | |
| CAI8003522.1 | PROTEIN C21ORF59 |
| CAI8003524.1 | CELL DIVISION PROTEIN KINASE |
| CAI8003526.1 | CELL DIVISION PROTEIN KINASE |
| CAI8003528.1 | CELL DIVISION PROTEIN KINASE |
| CAI8003530.1 | CELL DIVISION PROTEIN KINASE |
| CAI8003536.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
| CAI8003538.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
| CAI8003534.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
| CAI8003532.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
