Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003664.1 | PROPHAGE INTEGRASE |
| CAI8003665.1 | BCDNA.GH03377 |
| CAI8003667.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8003666.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8003668.1 | CITRATE SYNTHASE |
| CAI8003669.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8003670.1 | H2HPP ISOMERASE |
| CAI8003672.1 | MOLTING PROTEIN MLT-4 |
| CAI8003671.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8003674.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8003676.1 | TRNA SULFURTRANSFERASE |
| CAI8003678.1 | TRNA SULFURTRANSFERASE |
| CAI8003682.1 | TRNA SULFURTRANSFERASE |
| CAI8003680.1 | TRNA SULFURTRANSFERASE |
| CAI8003684.1 | TRNA SULFURTRANSFERASE |
| CAI8003686.1 | TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED |
| CAI8003688.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8003690.1 | UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE 1 |
| CAI8003692.1 | SUSC HOMOLOG-RELATED |
| CAI8003694.1 | |
| CAI8003698.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8003696.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8003700.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8003702.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8003704.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8003706.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8003708.1 | |
| CAI8003710.1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
| CAI8003721.1 | DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1 |
| CAI8003723.1 | |
| CAI8003725.1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| CAI8003727.1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| CAI8003729.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 |
| CAI8003733.1 | PROTEIN PHOSPHATASE |
| CAI8003731.1 | |
| CAI8003735.1 | DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1 |
| CAI8003737.1 | THIAMIN PYROPHOSPHOKINASE |
| CAI8003739.1 | IKB KINASE |
| CAI8003741.1 | IKB KINASE |
| CAI8003743.1 | IKB KINASE |
| CAI8003745.1 | IKB KINASE |
| CAI8003747.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8003749.1 | COATOMER |
| CAI8003751.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B |
| CAI8003753.1 | |
| CAI8003757.1 | AAA-FAMILY ATPASE |
| CAI8003755.1 | AAA-FAMILY ATPASE |
| CAI8003760.1 | |
| CAI8003772.1 | |
| CAI8003774.1 |
