Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003540.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
| CAI8003542.1 | |
| CAI8003544.1 | |
| CAI8003552.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
| CAI8003550.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
| CAI8003548.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
| CAI8003546.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
| CAI8003554.1 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
| CAI8003564.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003560.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003558.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003556.1 | |
| CAI8003562.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003566.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003568.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003570.1 | LETHAL 2 GIANT LARVAE PROTEIN |
| CAI8003572.1 | |
| CAI8003581.1 | |
| CAI8003583.1 | |
| CAI8003584.1 | |
| CAI8003585.1 | |
| CAI8003582.1 | |
| CAI8003586.1 | |
| CAI8003587.1 | CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN |
| CAI8003588.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8003589.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8003590.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8003591.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 |
| CAI8003594.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8003595.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8003593.1 | KELCH PROTEIN |
| CAI8003592.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8003596.1 | |
| CAI8003597.1 | |
| CAI8003599.1 | |
| CAI8003598.1 | |
| CAI8003600.1 | FATTY ACID DESATURASE 2 |
| CAI8003601.1 | |
| CAI8003602.1 | |
| CAI8003603.1 | |
| CAI8003604.1 | |
| CAI8003606.1 | |
| CAI8003605.1 | |
| CAI8003607.1 | |
| CAI8003609.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8003608.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8003610.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8003611.1 | |
| CAI8003613.1 | |
| CAI8003612.1 |
