Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003776.1 | SI:DKEY-261L7.2 |
| CAI8003778.1 | PROTEIN TOLB HOMOLOG |
| CAI8003780.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8003782.1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
| CAI8003784.1 | |
| CAI8003786.1 | PROTEIN TOLB HOMOLOG |
| CAI8003788.1 | PROTEIN TOLB HOMOLOG |
| CAI8003790.1 | ANAEROBIC SULFATASE-MATURATING ENZYME HOMOLOG ASLB-RELATED |
| CAI8003792.1 | |
| CAI8003794.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8003796.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8003798.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8003806.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003804.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003810.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003808.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003802.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003800.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8003812.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8003814.1 | MOXR FAMILY PROTEIN |
| CAI8003816.1 | HEME-DEPENDENT PEROXIDASE YWFI-RELATED |
| CAI8003818.1 | |
| CAI8003820.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8003822.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI8003824.1 | BLR3401 PROTEIN |
| CAI8003826.1 | POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030) |
| CAI8003836.1 | DNA REPAIR PROTEIN RECN |
| CAI8003840.1 | SHIKIMATE DEHYDROGENASE |
| CAI8003838.1 | SHIKIMATE DEHYDROGENASE |
| CAI8003844.1 | SHIKIMATE DEHYDROGENASE |
| CAI8003842.1 | SHIKIMATE DEHYDROGENASE |
| CAI8003846.1 | |
| CAI8003848.1 | IDURONATE 2-SULFATASE |
| CAI8003850.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8003852.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8003856.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8003858.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8003854.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8003860.1 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA |
| CAI8003862.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8003866.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8003864.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8003868.1 | PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC |
| CAI8003870.1 | |
| CAI8003878.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8003876.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8003874.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8003872.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8003880.1 | PROTEASE 4 |
| CAI8003882.1 | PROTEASE 4 |
