Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004126.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004116.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004114.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004120.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004128.1 | C2 DOMAIN-CONTAINING PROTEIN |
| CAI8004130.1 | SHIPPO-1-RELATED |
| CAI8004134.1 | |
| CAI8004132.1 | |
| CAI8004136.1 | |
| CAI8004138.1 | FORKHEAD BOX PROTEIN |
| CAI8004148.1 | |
| CAI8004150.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8004152.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8004154.1 | |
| CAI8004156.1 | |
| CAI8004158.1 | |
| CAI8004160.1 | |
| CAI8004162.1 | |
| CAI8004164.1 | CALPAIN |
| CAI8004166.1 | CALPAIN |
| CAI8004168.1 | CALPAIN |
| CAI8004170.1 | CALPAIN |
| CAI8004182.1 | DYNEIN HEAVY CHAIN |
| CAI8004184.1 | DYNEIN HEAVY CHAIN |
| CAI8004180.1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| CAI8004186.1 | DYNEIN HEAVY CHAIN |
| CAI8004188.1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| CAI8004194.1 | OBG GTPASE FAMILY |
| CAI8004196.1 | OBG GTPASE FAMILY |
| CAI8004192.1 | OBG GTPASE FAMILY |
| CAI8004190.1 | OBG GTPASE FAMILY |
| CAI8004198.1 | |
| CAI8004200.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI8004202.1 | |
| CAI8004204.1 | |
| CAI8004206.1 | |
| CAI8004208.1 | NUCLEOTIDE PYROPHOSPHOHYDROLASE |
| CAI8004210.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8004214.1 | |
| CAI8004216.1 | |
| CAI8004218.1 | |
| CAI8004220.1 | |
| CAI8004227.1 | RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F |
| CAI8004229.1 | RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F |
| CAI8004233.1 | |
| CAI8004231.1 | |
| CAI8004237.1 | |
| CAI8004235.1 | |
| CAI8004239.1 | |
| CAI8004241.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
