Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004360.1 | - |
| CAI8004364.1 | |
| CAI8004362.1 | |
| CAI8004366.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8004368.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8004370.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8004372.1 | XANTHINE DEHYDROGENASE |
| CAI8004376.1 | |
| CAI8004378.1 | |
| CAI8004380.1 | |
| CAI8004384.1 | |
| CAI8004382.1 | |
| CAI8004386.1 | |
| CAI8004388.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8004391.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8004393.1 | RECEPTOR KINASE-LIKE PROTEIN XA21 |
| CAI8004411.1 | |
| CAI8004409.1 | |
| CAI8004413.1 | |
| CAI8004415.1 | SYNTAXIN |
| CAI8004417.1 | SYNTAXIN |
| CAI8004416.1 | SYNTAXIN |
| CAI8004421.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| CAI8004422.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8004420.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| CAI8004419.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| CAI8004418.1 | |
| CAI8004423.1 | RIBOSOMAL PROTEIN L30 |
| CAI8004424.1 | RIBOSOMAL PROTEIN L30 |
| CAI8004425.1 | RIBOSOMAL PROTEIN L30 |
| CAI8004426.1 | KERATINOCYTE-ASSOCIATED PROTEIN 2 |
| CAI8004427.1 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| CAI8004428.1 | |
| CAI8004429.1 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| CAI8004430.1 | |
| CAI8004431.1 | |
| CAI8004432.1 | |
| CAI8004433.1 | |
| CAI8004434.1 | |
| CAI8004435.1 | |
| CAI8004438.1 | - |
| CAI8004437.1 | - |
| CAI8004436.1 | - |
| CAI8004439.1 | |
| CAI8004440.1 | |
| CAI8004441.1 | |
| CAI8004443.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8004442.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8004444.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8004445.1 | SRCR DOMAIN-CONTAINING PROTEIN |
