Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004646.1 | CAP BINDING PROTEIN |
| CAI8004648.1 | CAP BINDING PROTEIN |
| CAI8004650.1 | CAP BINDING PROTEIN |
| CAI8004652.1 | CAP BINDING PROTEIN |
| CAI8004654.1 | CAP BINDING PROTEIN |
| CAI8004656.1 | CAP BINDING PROTEIN |
| CAI8004634.1 | |
| CAI8004638.1 | |
| CAI8004636.1 | |
| CAI8004658.1 | |
| CAI8004660.1 | |
| CAI8004662.1 | |
| CAI8004664.1 | |
| CAI8004666.1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| CAI8004672.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8004670.1 | PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2-RELATED |
| CAI8004668.1 | PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2-RELATED |
| CAI8004674.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8004676.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8004678.1 | PLACENTAL PROTEIN 11-RELATED |
| CAI8004680.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 |
| CAI8004689.1 | |
| CAI8004691.1 | |
| CAI8004693.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G11590) |
| CAI8004695.1 | |
| CAI8004697.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8004699.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8004701.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8004707.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8004705.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8004703.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8004709.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8004713.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8004711.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8004715.1 | |
| CAI8004717.1 | |
| CAI8004719.1 | |
| CAI8004721.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8004723.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8004725.1 | ACYL-COA DEHYDROGENASE |
| CAI8004727.1 | |
| CAI8004732.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8004734.1 | ACID HYDRATASE |
| CAI8004736.1 | |
| CAI8004738.1 | H2HPP ISOMERASE |
| CAI8004740.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8004742.1 | AMINOPEPTIDASE |
| CAI8004744.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8004773.1 | KINESIN-RELATED |
| CAI8004771.1 | CENTROMERE PROTEIN E |
