Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004769.1 | KINESIN-RELATED |
| CAI8004767.1 | KINESIN-RELATED |
| CAI8004775.1 | KINESIN-RELATED |
| CAI8004777.1 | EG:114D9.1 PROTEIN-RELATED |
| CAI8004783.1 | UNCHARACTERIZED |
| CAI8004781.1 | UNCHARACTERIZED |
| CAI8004785.1 | LD33695P |
| CAI8004779.1 | TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X |
| CAI8004787.1 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED |
| CAI8004789.1 | C1ORF73 PROTEIN |
| CAI8004791.1 | 54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL |
| CAI8004793.1 | |
| CAI8004795.1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| CAI8004799.1 | |
| CAI8004797.1 | |
| CAI8004803.1 | |
| CAI8004801.1 | |
| CAI8004805.1 | SOLUTE CARRIER FAMILY 25 |
| CAI8004809.1 | |
| CAI8004811.1 | |
| CAI8004807.1 | |
| CAI8004813.1 | |
| CAI8004815.1 | SUGAR KINASE |
| CAI8004823.1 | RNA METHYLTRANSFERASE |
| CAI8004821.1 | RNA METHYLTRANSFERASE |
| CAI8004819.1 | RNA METHYLTRANSFERASE |
| CAI8004817.1 | RNA METHYLTRANSFERASE |
| CAI8004825.1 | RNA METHYLTRANSFERASE |
| CAI8004829.1 | RNA METHYLTRANSFERASE |
| CAI8004827.1 | RNA METHYLTRANSFERASE |
| CAI8004833.1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| CAI8004831.1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| CAI8004835.1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| CAI8004839.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8004837.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8004841.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8004843.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8004845.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8004853.1 | WD REPEAT PROTEIN 26-RELATED |
| CAI8004851.1 | WD REPEAT PROTEIN 26-RELATED |
| CAI8004849.1 | WD REPEAT PROTEIN 26-RELATED |
| CAI8004847.1 | WD REPEAT PROTEIN 26-RELATED |
| CAI8004855.1 | WD REPEAT PROTEIN 26-RELATED |
| CAI8004857.1 | WD REPEAT PROTEIN 8-RELATED |
| CAI8004861.1 | PROTEIN PAXX |
| CAI8004859.1 | PROTEIN PAXX |
| CAI8004863.1 | UNCHARACTERIZED |
| CAI8004872.1 | |
| CAI8004870.1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8004868.1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
