Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004876.1 | |
| CAI8004874.1 | |
| CAI8004878.1 | |
| CAI8004895.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8004897.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8004899.1 | RIBOSOME MATURATION FACTOR RIMP |
| CAI8004901.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8004903.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8004905.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004909.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004907.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004913.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004911.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004917.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004915.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8004919.1 | RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED |
| CAI8004921.1 | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA |
| CAI8004923.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8004925.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8004927.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8004929.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8004931.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8004933.1 | CHROMOSOME PARTITION PROTEIN MUKB |
| CAI8004935.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC |
| CAI8004937.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC |
| CAI8004939.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8004941.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8004943.1 | STATOR ELEMENT OF FLAGELLAR MOTOR COMPLEX |
| CAI8004945.1 | PROLYL-TRNA SYNTHETASE |
| CAI8004949.1 | PROLYL-TRNA SYNTHETASE |
| CAI8004947.1 | PROLYL-TRNA SYNTHETASE |
| CAI8004951.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI8004953.1 | TYPE 4 PREPILIN-LIKE PROTEINS LEADER PEPTIDE-PROCESSING ENZYME |
| CAI8004955.1 | GENERAL SECRETION PATHWAY PROTEIN |
| CAI8004957.1 | TWITCHING MOTILITY PROTEIN PILT |
| CAI8004959.1 | TWITCHING MOTILITY PROTEIN PILT |
| CAI8004961.1 | TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED |
| CAI8004963.1 | PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE |
| CAI8004965.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8004967.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8004969.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8004973.1 | RIBOSOMAL PROTEIN L17 |
| CAI8004975.1 | RIBOSOMAL PROTEIN L17 |
| CAI8004971.1 | RIBOSOMAL PROTEIN L17 |
| CAI8004977.1 | |
| CAI8004979.1 | |
| CAI8004981.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8004985.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8004983.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8004987.1 |
