Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005123.1 | CHONDROITIN SYNTHASE |
| CAI8005119.1 | CHONDROITIN SYNTHASE |
| CAI8005121.1 | CHONDROITIN SYNTHASE |
| CAI8005127.1 | CHONDROITIN SYNTHASE |
| CAI8005125.1 | CHONDROITIN SYNTHASE |
| CAI8005129.1 | CHONDROITIN SYNTHASE |
| CAI8005131.1 | |
| CAI8005133.1 | |
| CAI8005135.1 | |
| CAI8005137.1 | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED |
| CAI8005139.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| CAI8005141.1 | |
| CAI8005143.1 | PEROXIREDOXIN |
| CAI8005146.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8005153.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8005151.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8005155.1 | |
| CAI8005161.1 | APOPTOTIC PROTEASE-ACTIVATING FACTOR 1 |
| CAI8005159.1 | APOPTOTIC PROTEASE-ACTIVATING FACTOR 1 |
| CAI8005157.1 | APOPTOTIC PROTEASE-ACTIVATING FACTOR 1 |
| CAI8005163.1 | |
| CAI8005166.1 | |
| CAI8005168.1 | |
| CAI8005174.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8005176.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8005178.1 | ZGC:162816-RELATED |
| CAI8005180.1 | ZGC:162816-RELATED |
| CAI8005182.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8005185.1 | ANKYRIN REPEAT CONTAINING |
| CAI8005187.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8005190.1 | |
| CAI8005192.1 | |
| CAI8005194.1 | |
| CAI8005198.1 | |
| CAI8005196.1 | |
| CAI8005200.1 | |
| CAI8005202.1 | |
| CAI8005204.1 | |
| CAI8005210.1 | |
| CAI8005211.1 | |
| CAI8005208.1 | |
| CAI8005212.1 | |
| CAI8005213.1 | |
| CAI8005218.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005217.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005216.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005215.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005214.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005220.1 | GLUTAMINE-TRNA LIGASE |
| CAI8005219.1 | GLUTAMINE-TRNA LIGASE |
