Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004446.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8004447.1 | RIBONUCLEASE VAPC2 |
| CAI8004448.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8004449.1 | |
| CAI8004450.1 | |
| CAI8004451.1 | |
| CAI8004452.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8004453.1 | - |
| CAI8004454.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8004455.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8004456.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004457.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004458.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004460.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004459.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004464.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004462.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004461.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004463.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004465.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004466.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004468.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004467.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004469.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004470.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004471.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004472.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004473.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004474.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8004475.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8004477.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8004476.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8004478.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8004479.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI8004480.1 | |
| CAI8004481.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI8004487.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8004485.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8004483.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8004493.1 | QUINOLINATE SYNTHETASE A |
| CAI8004491.1 | QUINOLINATE SYNTHETASE A |
| CAI8004489.1 | QUINOLINATE SYNTHETASE A |
| CAI8004495.1 | |
| CAI8004497.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8004503.1 | TRANSAMIDASE |
| CAI8004501.1 | TRANSAMIDASE |
| CAI8004499.1 | TRANSAMIDASE |
| CAI8004505.1 | |
| CAI8004507.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8004509.1 | LUCIFERASE-LIKE MONOOXYGENASE |
