Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004020.1 | OS01G0750732 PROTEIN |
| CAI8004022.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 |
| CAI8004024.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 |
| CAI8004030.1 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| CAI8004028.1 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| CAI8004026.1 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| CAI8004032.1 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| CAI8004034.1 | |
| CAI8004038.1 | UNCHARACTERIZED |
| CAI8004036.1 | UNCHARACTERIZED |
| CAI8004040.1 | UNCHARACTERIZED |
| CAI8004042.1 | POS9-ACTIVATING FACTOR FAP7-RELATED |
| CAI8004044.1 | CADHERIN-23 |
| CAI8004046.1 | CADHERIN-87A |
| CAI8004050.1 | CADHERIN-87A |
| CAI8004048.1 | CADHERIN-87A |
| CAI8004052.1 | NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT |
| CAI8004054.1 | NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT |
| CAI8004056.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8004058.1 | NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13 |
| CAI8004064.1 | CASEIN KINASE-RELATED |
| CAI8004062.1 | CASEIN KINASE-RELATED |
| CAI8004060.1 | CASEIN KINASE-RELATED |
| CAI8004066.1 | |
| CAI8004068.1 | CASEIN KINASE-RELATED |
| CAI8004072.1 | CASEIN KINASE-RELATED |
| CAI8004070.1 | CASEIN KINASE-RELATED |
| CAI8004074.1 | |
| CAI8004076.1 | SUGAR KINASE |
| CAI8004082.1 | |
| CAI8004080.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8004078.1 | |
| CAI8004086.1 | |
| CAI8004084.1 | |
| CAI8004088.1 | |
| CAI8004090.1 | |
| CAI8004092.1 | PIKACHURIN-LIKE PROTEIN |
| CAI8004094.1 | |
| CAI8004096.1 | |
| CAI8004102.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004104.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004106.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004100.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004098.1 | |
| CAI8004108.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004110.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004112.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
| CAI8004118.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004124.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8004122.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
