Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004243.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI8004247.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI8004245.1 | |
| CAI8004261.1 | PEPTIDE DEFORMYLASE |
| CAI8004263.1 | PEPTIDE DEFORMYLASE |
| CAI8004265.1 | MULTIFUNCTIONAL CCA PROTEIN |
| CAI8004267.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8004269.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8004271.1 | ALCOHOL DEHYDROGENASE 1-RELATED |
| CAI8004273.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8004275.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8004277.1 | |
| CAI8004279.1 | PHOSPHATIDYLGLYCEROPHOSPHATASE A |
| CAI8004281.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8004283.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8004285.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8004287.1 | ELONGATION FACTOR TS |
| CAI8004289.1 | URIDYLATE KINASE |
| CAI8004291.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8004295.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8004293.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8004297.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8004299.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8004301.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8004303.1 | DNA POLYMERASE III SUBUNIT EPSILON |
| CAI8004305.1 | DNA POLYMERASE III SUBUNIT EPSILON |
| CAI8004307.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8004309.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8004311.1 | |
| CAI8004313.1 | |
| CAI8004315.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8004317.1 | METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN |
| CAI8004319.1 | BIFUNCTIONAL TH2 PROTEIN |
| CAI8004321.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8004323.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8004325.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8004327.1 | SLR0285 PROTEIN |
| CAI8004329.1 | |
| CAI8004331.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8004333.1 | ELONGATION FACTOR TU-RELATED |
| CAI8004340.1 | |
| CAI8004342.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8004344.1 | |
| CAI8004346.1 | |
| CAI8004348.1 | PEPTIDASE S45 PENICILLIN AMIDASE |
| CAI8004350.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8004352.1 | AMINOMETHYLTRANSFERASE |
| CAI8004356.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8004354.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8004358.1 | LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED |
