Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8004511.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8004513.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8004515.1 | ACYL-COA SYNTHETASE |
| CAI8004517.1 | ACYL-COA SYNTHETASE |
| CAI8004519.1 | ACYL-COA SYNTHETASE |
| CAI8004526.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8004528.1 | KELCH REPEAT DOMAIN |
| CAI8004532.1 | |
| CAI8004530.1 | |
| CAI8004534.1 | |
| CAI8004542.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8004540.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8004538.1 | ANKYRIN REPEAT PROTEIN |
| CAI8004536.1 | |
| CAI8004544.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8004546.1 | |
| CAI8004558.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8004560.1 | |
| CAI8004562.1 | |
| CAI8004564.1 | |
| CAI8004566.1 | |
| CAI8004568.1 | |
| CAI8004570.1 | |
| CAI8004580.1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
| CAI8004582.1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
| CAI8004578.1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
| CAI8004576.1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
| CAI8004574.1 | |
| CAI8004572.1 | |
| CAI8004584.1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
| CAI8004588.1 | RAGULATOR COMPLEX PROTEIN LAMTOR1 |
| CAI8004586.1 | RAGULATOR COMPLEX PROTEIN LAMTOR1 |
| CAI8004590.1 | RAGULATOR COMPLEX PROTEIN LAMTOR1 |
| CAI8004592.1 | |
| CAI8004594.1 | VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21 |
| CAI8004596.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 |
| CAI8004608.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004606.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004604.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004602.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004600.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004598.1 | |
| CAI8004610.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8004614.1 | |
| CAI8004616.1 | |
| CAI8004630.1 | |
| CAI8004632.1 | |
| CAI8004640.1 | CAP BINDING PROTEIN |
| CAI8004644.1 | CAP BINDING PROTEIN |
| CAI8004642.1 | CAP BINDING PROTEIN |
