Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005321.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8005322.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8005323.1 | |
| CAI8005324.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8005325.1 | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE |
| CAI8005326.1 | UNCHARACTERIZED PROTEIN YJBQ-RELATED |
| CAI8005327.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8005328.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8005329.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8005330.1 | |
| CAI8005331.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8005332.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8005333.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8005334.1 | |
| CAI8005335.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8005336.1 | LIPOPROTEIN-RELATED |
| CAI8005337.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8005338.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8005339.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8005340.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8005341.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8005342.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8005343.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8005344.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8005345.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8005346.1 | BACTERIAL HEMOLYSIN-LIKE PROTEIN |
| CAI8005347.1 | |
| CAI8005348.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8005349.1 | |
| CAI8005350.1 | |
| CAI8005351.1 | PEPTIDASE S45 PENICILLIN AMIDASE |
| CAI8005352.1 | |
| CAI8005353.1 | |
| CAI8005356.1 | |
| CAI8005355.1 | |
| CAI8005354.1 | |
| CAI8005358.1 | |
| CAI8005357.1 | |
| CAI8005359.1 | |
| CAI8005360.1 | |
| CAI8005361.1 | |
| CAI8005362.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8005363.1 | |
| CAI8005364.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8005366.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8005367.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8005365.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8005368.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8005370.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8005369.1 | TRANSPORT ATP-BINDING PROTEIN |
