Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005371.1 | |
| CAI8005373.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8005372.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8005374.1 | |
| CAI8005375.1 | DNA POLYMERASE I |
| CAI8005376.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8005377.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8005378.1 | GLYCOSYL TRANSFERASE |
| CAI8005379.1 | ASPARTATE KINASE |
| CAI8005382.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8005381.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8005380.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8005383.1 | SYNTHASE (CCG-9), PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12100)-RELATED |
| CAI8005384.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8005386.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8005385.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8005387.1 | AAA-FAMILY ATPASE |
| CAI8005388.1 | CCCH ZINC FINGER/TIS11-RELATED |
| CAI8005390.1 | ACID AMIDASE |
| CAI8005389.1 | ACID AMIDASE |
| CAI8005391.1 | |
| CAI8005392.1 | |
| CAI8005393.1 | AGAP000124-PA |
| CAI8005394.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI8005395.1 | |
| CAI8005396.1 | EPH RECEPTOR A5 |
| CAI8005397.1 | |
| CAI8005398.1 | |
| CAI8005400.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8005401.1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8005399.1 | |
| CAI8005402.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8005403.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8005404.1 | |
| CAI8005408.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8005407.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8005406.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8005409.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8005405.1 | |
| CAI8005410.1 | UNCHARACTERIZED |
| CAI8005411.1 | UNCHARACTERIZED |
| CAI8005412.1 | UNCHARACTERIZED |
| CAI8005413.1 | GABA-B RECEPTOR |
| CAI8005414.1 | |
| CAI8005415.1 | |
| CAI8005416.1 | PHOSPHOLIPASE B, PLB1 |
| CAI8005417.1 | PHOSPHOLIPASE B, PLB1 |
| CAI8005418.1 | PHOSPHOLIPASE B, PLB1 |
| CAI8005420.1 | |
| CAI8005419.1 |
