Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005471.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8005472.1 | ALIPHATIC SULFONATES-BINDING PROTEIN-RELATED |
| CAI8005473.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8005475.1 | TRANSAMIDASE |
| CAI8005474.1 | TRANSAMIDASE |
| CAI8005476.1 | |
| CAI8005477.1 | UNCHARACTERIZED PROTEIN TLDD AND PMBA |
| CAI8005478.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8005479.1 | |
| CAI8005480.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8005481.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8005482.1 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| CAI8005483.1 | RIBONUCLEASE VAPC2 |
| CAI8005484.1 | |
| CAI8005485.1 | |
| CAI8005486.1 | |
| CAI8005487.1 | |
| CAI8005488.1 | |
| CAI8005489.1 | |
| CAI8005490.1 | - |
| CAI8005491.1 | TRANSPOSASE |
| CAI8005492.1 | |
| CAI8005493.1 | |
| CAI8005494.1 | |
| CAI8005495.1 | MORTALITY FACTOR 4-LIKE PROTEIN |
| CAI8005496.1 | |
| CAI8005497.1 | |
| CAI8005501.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI8005503.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI8005502.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI8005500.1 | PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN |
| CAI8005499.1 | PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN |
| CAI8005498.1 | PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN |
| CAI8005504.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI8005505.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI8005506.1 | |
| CAI8005507.1 | |
| CAI8005508.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8005509.1 | |
| CAI8005510.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8005513.1 | |
| CAI8005512.1 | |
| CAI8005511.1 | |
| CAI8005514.1 | |
| CAI8005519.1 | PROTEIN SIDEKICK |
| CAI8005518.1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| CAI8005521.1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| CAI8005520.1 | PROTEIN SIDEKICK |
| CAI8005522.1 | PROTEIN SIDEKICK |
| CAI8005515.1 | PROTEIN SIDEKICK |
