Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005571.1 | |
| CAI8005572.1 | PORCUPINE |
| CAI8005573.1 | PORCUPINE |
| CAI8005575.1 | PORCUPINE |
| CAI8005576.1 | PORCUPINE |
| CAI8005574.1 | PORCUPINE |
| CAI8005577.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005578.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005579.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005580.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005581.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005582.1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
| CAI8005583.1 | |
| CAI8005586.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005588.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005587.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005585.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005584.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005593.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005592.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005591.1 | |
| CAI8005590.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005589.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005594.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005595.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8005597.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8005596.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8005598.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8005600.1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| CAI8005601.1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| CAI8005599.1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| CAI8005602.1 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| CAI8005603.1 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| CAI8005604.1 | RAD52 MOTIF-CONTAINING PROTEIN 1 |
| CAI8005606.1 | |
| CAI8005605.1 | MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER |
| CAI8005608.1 | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED |
| CAI8005607.1 | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED |
| CAI8005609.1 | |
| CAI8005610.1 | UNCHARACTERIZED |
| CAI8005611.1 | RNA BINDING PROTEIN |
| CAI8005612.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8005613.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8005618.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8005615.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8005617.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8005614.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8005616.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8005619.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8005620.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
