Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8005622.1 | KELCH PROTEIN |
| CAI8005621.1 | KELCH PROTEIN |
| CAI8005623.1 | LD33804P |
| CAI8005624.1 | |
| CAI8005625.1 | |
| CAI8005626.1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
| CAI8005627.1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
| CAI8005628.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI8005629.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI8005630.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI8005631.1 | |
| CAI8005633.1 | UNCHARACTERIZED |
| CAI8005632.1 | UNCHARACTERIZED |
| CAI8005634.1 | |
| CAI8005635.1 | |
| CAI8005636.1 | |
| CAI8005637.1 | KELCH PROTEIN |
| CAI8005638.1 | |
| CAI8005639.1 | INTEGRIN BETA SUBUNIT |
| CAI8005640.1 | |
| CAI8005641.1 | |
| CAI8005642.1 | |
| CAI8005643.1 | |
| CAI8005644.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8005645.1 | LINEARMYCIN RESISTANCE ATP-BINDING PROTEIN LNRL |
| CAI8005646.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8005647.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8005648.1 | |
| CAI8005649.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8005650.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8005651.1 | PHAGE INTEGRASE-RELATED |
| CAI8005652.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8005653.1 | AMINOPEPTIDASE |
| CAI8005654.1 | |
| CAI8005655.1 | ELONGATION FACTOR P |
| CAI8005656.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8005657.1 | EXODEOXYRIBONUCLEASE 7 SMALL SUBUNIT |
| CAI8005658.1 | EXONUCLEASE |
| CAI8005659.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8005660.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI8005661.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI8005662.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005663.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005666.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005665.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005664.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005667.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005668.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8005669.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8005670.1 |
