Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8003191.1 | UDP-GALACTOPYRANOSE MUTASE |
| CAI8003193.1 | UDP-GALACTOPYRANOSE MUTASE |
| CAI8003195.1 | MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE |
| CAI8003197.1 | SIALIC ACID TRAP TRANSPORTER PERMEASE PROTEIN SIAT-RELATED |
| CAI8003200.1 | |
| CAI8003202.1 | |
| CAI8003204.1 | |
| CAI8003207.1 | |
| CAI8003211.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8003209.1 | |
| CAI8003213.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8003215.1 | |
| CAI8003218.1 | |
| CAI8003220.1 | |
| CAI8003227.1 | CADHERIN-23 |
| CAI8003229.1 | CADHERIN-23 |
| CAI8003233.1 | GLUTAMATE DEHYDROGENASE |
| CAI8003235.1 | GLUTAMATE DEHYDROGENASE |
| CAI8003231.1 | GLUTAMATE DEHYDROGENASE |
| CAI8003239.1 | SORTING NEXIN 17 AND 27 |
| CAI8003237.1 | SORTING NEXIN 17 AND 27 |
| CAI8003241.1 | |
| CAI8003243.1 | |
| CAI8003245.1 | |
| CAI8003251.1 | - |
| CAI8003253.1 | ANTITOXIN HICB |
| CAI8003255.1 | AAA FAMILY ATPASE |
| CAI8003257.1 | |
| CAI8003259.1 | RECA |
| CAI8003261.1 | REGULATORY PROTEIN RECX FAMILY PROTEIN |
| CAI8003263.1 | EXONUCLEASE |
| CAI8003265.1 | 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE |
| CAI8003267.1 | RIBONUCLEASE Y |
| CAI8003269.1 | |
| CAI8003271.1 | |
| CAI8003285.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003283.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003281.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003279.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003277.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003275.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003273.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8003287.1 | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED |
| CAI8003289.1 | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED |
| CAI8003291.1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
| CAI8003293.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8003295.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8003297.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8003303.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8003305.1 | CYTOKINE RECEPTOR |
