Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8002718.1 | |
| CAI8002719.1 | CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 |
| CAI8002722.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8002721.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8002720.1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
| CAI8002723.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8002725.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8002727.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8002730.1 | |
| CAI8002732.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8002734.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8002746.1 | |
| CAI8002748.1 | |
| CAI8002750.1 | |
| CAI8002752.1 | |
| CAI8002754.1 | WD REPEAT-CONTAINING PROTEIN 55 |
| CAI8002756.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8002758.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8002760.1 | |
| CAI8002766.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002764.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002762.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002768.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002772.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
| CAI8002774.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
| CAI8002770.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
| CAI8002776.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
| CAI8002778.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
| CAI8002780.1 | |
| CAI8002784.1 | DOUBLECORTIN DOMAIN CONTAINING 2 |
| CAI8002786.1 | DOUBLECORTIN DOMAIN CONTAINING 2 |
| CAI8002782.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8002790.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8002788.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8002792.1 | WD40 REPEAT PROTEIN |
| CAI8002794.1 | BETA TRANSDUCIN-RELATED PROTEIN |
| CAI8002796.1 | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN |
| CAI8002798.1 | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN |
| CAI8002800.1 | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN |
| CAI8002802.1 | |
| CAI8002804.1 | |
| CAI8002829.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8002831.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8002833.1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| CAI8002843.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002845.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002839.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002847.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002841.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| CAI8002849.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
